PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00015921-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bHLH
Protein Properties Length: 494aa    MW: 55393.6 Da    PI: 6.3984
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00015921-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.53.7e-11313356755
                         HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                           Er+RR+ri++++++Lr+l+Pk +      K++  +iL  A+ YI++L+
  WALNUT_00015921-RA 313 VTERNRRNRIKDGLFTLRSLVPKiS------KMDRTAILGDAIGYIQELE 356
                         57*********************66......****************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142158.0E-2113162IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000832.52E-10304360No hitNo description
SuperFamilySSF474591.14E-15304371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.176306355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-12312361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.2E-16313372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.6E-9314356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0048657Biological Processanther wall tapetum cell differentiation
GO:0005634Cellular Componentnucleus
GO:0000978Molecular FunctionRNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MEDALKGLET LVEWLRPLAQ TRAWEYCVVW KLGDDPSRFI EWIGCCCSGG VDGDENVKEE  60
PGEEHHSSPL CRDVHFEHPM RTKACQALAQ LPSSMPLYSG FHGEVVISNQ PRWIFSDANS  120
SNSATSNDSL GTQVLIPVVG GLVELFATEH IPKDQKFIEL ITAQCTISFD QEAMSAWSYA  180
NPNLSGNHLD PVREDYLPNW PLPLHLPSLN PRIQALPPVI HSSSYSCVDR SSSGSNPSHE  240
YPSLDLDSCQ ISLHGAINQS IGKSSGSKKA KYSQCSLKRR TGSIANGRNM VENDETKVIK  300
KQEREQYHSK NLVTERNRRN RIKDGLFTLR SLVPKISKMD RTAILGDAIG YIQELEEEVK  360
QLQDELMEMN EEDSRKNESE LKISTSDQIQ GSATTPLPPT QRNQGLSSSG EKKKTEVQVE  420
VNQISQRDFL IKFFCEHKRG GFSRLMESLH LLGLQVADAN ITTFYGKVLN ILKVEAKKDI  480
QLKKLRSSLI ELTN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006484318.11e-156PREDICTED: transcription factor bHLH90
TrEMBLU5G6A61e-154U5G6A6_POPTR; Uncharacterized protein
STRINGPOPTR_0008s19390.11e-153(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF122653033
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10610.13e-48bHLH family protein